Input:
Parameter |
Example |
Mandatory |
Notes |
concept_name |
OMOP Hip Fracture 1 |
Yes |
concept_id=500000601 |
Sample query run:
The following is a sample run of the query. The input parameters are highlighted in blue
SELECT gender,
CASE
WHEN age_grp = 0 THEN '0-9'
WHEN age_grp = 1 THEN '10-19'
WHEN age_grp = 2 THEN '20-29'
WHEN age_grp = 3 THEN '30-39'
WHEN age_grp = 4 THEN '40-49'
WHEN age_grp = 5 THEN '50-59'
WHEN age_grp = 6 THEN '60-69'
WHEN age_grp = 7 THEN '70-79'
WHEN age_grp = 8 THEN '80-89'
WHEN age_grp = 9 THEN '90-99'
WHEN age_grp > 9 THEN '100+'
END age_grp,
count(*) AS num_patients,
min( duration ) AS min_duration_count,
max( duration ) AS max_duration_count,
avg( duration ) AS avg_duration_count
FROM -- patient with hip fracture, age, gender
( SELECT DISTINCT condition.person_id
, gender.concept_name As gender
, EXTRACT( YEAR FROM condition_era_start_date ) - year_of_birth AS age
, condition_era_end_date - condition_era_start_date + 1 AS duration
, (EXTRACT( YEAR FROM condition_era_start_date) - person.year_of_birth)/10 AS age_grp
FROM condition_era condition
JOIN -- definition of Hip Fracture
( SELECT DISTINCT descendant_concept_id
FROM vocabulary.relationship
JOIN vocabulary.concept_relationship rel USING( relationship_id )
JOIN vocabulary.concept concept1 ON concept1.concept_id = concept_id_1
JOIN vocabulary.concept_ancestor ON ancestor_concept_id = concept_id_2
WHERE relationship_name = 'HOI contains SNOMED (OMOP)'
AND concept1.concept_name = 'OMOP Hip Fracture 1'
AND SYSDATE BETWEEN rel.valid_start_date and rel.valid_end_date
) ON descendant_concept_id = condition_concept_id
JOIN person ON person.person_id = condition.person_id
JOIN vocabulary.concept gender ON gender.concept_id = gender_concept_id
) t1
GROUP BY gender, age_grp, age
ORDER BY age_grp, gender
Output:
Output field list:
Field |
Description |
gender |
Patient gender name. i.e. MALE, FEMALE... |
age_grp |
Age group in increments of 10 years |
num_patients |
Number of patients withing gender and age group with associated condition |
min_duration |
Minimum duration of condition in days |
max_duration |
Maximum duration of condition in days |
avg_duration |
Average duration of condition in days |
Sample output record:
Field |
Description |
gender |
FEMALE |
age_grp |
10-19 |
num_patients |
518 |
min_duration |
1 |
max_duration |
130 |
avg_duration |
8 |
|
|